Bioconda

General

• Home page: https://bioconda.github.io/index.html

• List of available packages: https://bioconda.github.io/conda-package_index.html

Bioconda on ARC

Available modules

To activate

$ module avail bioconda
-------------------- /global/software/Modules/4.6.0/modulefiles -----------------
bioconda/2018.11  bioconda/conda3  

$ module load biconda/2018.11
Loading bioconda/2018.11
  Loading requirement: bioconda/conda3

Check software

$ samtools --version
samtools 1.9
Using htslib 1.9
Copyright (C) 2018 Genome Research Ltd.

$ salmon --version
salmon 0.11.3

$ kraken --version
Kraken version 0.10.6-unreleased
Copyright 2013-2015, Derrick Wood (dwood@cs.jhu.edu)

Get the list of installed packages:

$ conda list
....
....

Links

ARC Software pages