Bioconda

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General

Bioconda on ARC

Available modules

To activate

$ module avail bioconda
-------------------- /global/software/Modules/4.6.0/modulefiles -----------------
bioconda/2018.11  bioconda/conda3  

$ module load biconda/2018.11
Loading bioconda/2018.11
  Loading requirement: bioconda/conda3

Check software

$ samtools --version
samtools 1.9
Using htslib 1.9
Copyright (C) 2018 Genome Research Ltd.

$ salmon --version
salmon 0.11.3

$ kraken --version
Kraken version 0.10.6-unreleased
Copyright 2013-2015, Derrick Wood (dwood@cs.jhu.edu)

Get the list of installed packages:

$ conda list
....
....

Links

ARC Software pages