Bioconda
Jump to navigation
Jump to search
General
- Home page: https://bioconda.github.io/index.html
- List of available packages: https://bioconda.github.io/conda-package_index.html
Bioconda on ARC
Available modules
To activate
$ module avail bioconda -------------------- /global/software/Modules/4.6.0/modulefiles ----------------- bioconda/2018.11 bioconda/conda3 $ module load biconda/2018.11 Loading bioconda/2018.11 Loading requirement: bioconda/conda3
Check software
$ samtools --version samtools 1.9 Using htslib 1.9 Copyright (C) 2018 Genome Research Ltd. $ salmon --version salmon 0.11.3 $ kraken --version Kraken version 0.10.6-unreleased Copyright 2013-2015, Derrick Wood (dwood@cs.jhu.edu)
Get the list of installed packages:
$ conda list .... ....