ARC Software: Difference between revisions
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For some general consideration for setting up software in your home directory see [[Managing software on ARC]]. | |||
For some general consideration for setting up software in your home directory see | |||
[[Managing software on ARC]]. | |||
= Software Management = | = Software Management = | ||
* [[Conda on ARC | Conda]] and Miniconda | * [[Conda on ARC | Conda]] and Miniconda | ||
= General Tools = | = General Tools = | ||
* [[Python]] | * [[Python]] | ||
* [[Perl]] | * [[Perl]] | ||
= File Format Libraries = | |||
* [[HDF5]] | * [[HDF5]] | ||
= Atmospheric research = | = Atmospheric research = | ||
* [[CESM]] | * [[CESM]] | ||
= Physics = | = Physics = | ||
* [[ROOT]] - An open-source data analysis framework used by high energy physics and others. | * [[ROOT]] - An open-source data analysis framework used by high energy physics and others. | ||
= Chemistry = | = Chemistry = | ||
* [[Gaussian on ARC | Gaussian 16]] - a commercial software package for electronic structure modelling. | * [[Gaussian on ARC | Gaussian 16]] - a commercial software package for electronic structure modelling. | ||
* [[ORCA]] - an ab initio quantum chemistry program package that contains modern electronic structure methods. | * [[ORCA]] - an ab initio quantum chemistry program package that contains modern electronic structure methods. | ||
* [[GROMACS]] - Classical molecular dynamics simulator. | * [[GROMACS]] - Classical molecular dynamics simulator. | ||
= Computational Fluid Dynamics = | = Computational Fluid Dynamics = | ||
* [[ANSYS]] - Fluent and CFX - commercial CFD software. | * [[ANSYS]] - Fluent and CFX - commercial CFD software. | ||
* [[OpenFOAM]] - Open-source toolkit for creating CFD applications. | * [[OpenFOAM]] - Open-source toolkit for creating CFD applications. | ||
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* [[ANSYS]] - ANSYS Fluent - commercial software for finite element-based structural analysis. | * [[ANSYS]] - ANSYS Fluent - commercial software for finite element-based structural analysis. | ||
* [[Abaqus]] - Commercial software for finite element-based analysis. | * [[Abaqus]] - Commercial software for finite element-based analysis. | ||
* [[Nektar++]] -- a tensor product based finite element package designed to allow one to construct efficient classical low polynomial order h-type solvers (where h is the size of the finite element) as well as higher p-order piecewise polynomial order solvers. | * [[Nektar++]] -- a tensor product based finite element package designed to allow one to construct efficient classical low polynomial order h-type solvers (where h is the size of the finite element) as well as higher p-order piecewise polynomial order solvers. | ||
= Geospatial Analysis = | = Geospatial Analysis = | ||
* [[GDAL on ARC | GDAL]] | * [[GDAL on ARC | GDAL]] | ||
* [[Geopandas on ARC | Geopandas]] | * [[Geopandas on ARC | Geopandas]] | ||
= Machine Learning = | = Machine Learning = | ||
* [[Tensorflow on ARC | Tensorflow]] | * [[Tensorflow on ARC | Tensorflow]] | ||
* [[Torch on ARC | PyTorch]] | * [[Torch on ARC | PyTorch]] | ||
= Mathematical Libaries and Applications = | = Mathematical Libaries and Applications = | ||
* [[MATLAB]] - Commercial general-purpose high-level programming environment for linear algebra, statistics, image processing and a wide range of other calculations. | * [[MATLAB]] - Commercial general-purpose high-level programming environment for linear algebra, statistics, image processing and a wide range of other calculations. | ||
* [[Mathematica]] - Commercial general-purpose high-level programming package for both symbolic and numerical calculations. | * [[Mathematica]] - Commercial general-purpose high-level programming package for both symbolic and numerical calculations. | ||
= Microscopy = | = Microscopy = | ||
* [[Relion on ARC | Relion]] | * [[Relion on ARC | Relion]] | ||
* [[Cellprofiler on ARC | Cellprofiler]] | * [[Cellprofiler on ARC | Cellprofiler]] | ||
= Neuroimaging = | = Neuroimaging = | ||
* [[Freesurfer on ARC | Freesurfer]] | * [[Freesurfer on ARC | Freesurfer]] | ||
* [[FSL on ARC | FSL]] | * [[FSL on ARC | FSL]] | ||
* [[fmriprep on ARC | fmriprep]] | * [[fmriprep on ARC | fmriprep]] | ||
* [[Statistical Parametric Mapping on ARC | SPM 12]] | * [[Statistical Parametric Mapping on ARC | SPM 12]] | ||
= Statistics = | = Statistics = | ||
* [[R on ARC | R]] | * [[R on ARC | R]] | ||
* [[Stan on ARC | rstan]] | * [[Stan on ARC | rstan]] | ||
__NOTOC__ | |||
[[Category:ARC]] | [[Category:ARC]] | ||
[[Category:Software]] | [[Category:Software]] | ||
{{Navbox ARC}} | |||
{{Navbox | |||
Revision as of 18:00, 21 September 2023
For some general consideration for setting up software in your home directory see Managing software on ARC.
Software Management
- Conda and Miniconda
General Tools
File Format Libraries
Atmospheric research
Physics
- ROOT - An open-source data analysis framework used by high energy physics and others.
Chemistry
- Gaussian 16 - a commercial software package for electronic structure modelling.
- ORCA - an ab initio quantum chemistry program package that contains modern electronic structure methods.
- GROMACS - Classical molecular dynamics simulator.
Computational Fluid Dynamics
- ANSYS - Fluent and CFX - commercial CFD software.
- OpenFOAM - Open-source toolkit for creating CFD applications.
Finite Element Modelling
- ANSYS - ANSYS Fluent - commercial software for finite element-based structural analysis.
- Abaqus - Commercial software for finite element-based analysis.
- Nektar++ -- a tensor product based finite element package designed to allow one to construct efficient classical low polynomial order h-type solvers (where h is the size of the finite element) as well as higher p-order piecewise polynomial order solvers.
Geospatial Analysis
Machine Learning
Mathematical Libaries and Applications
- MATLAB - Commercial general-purpose high-level programming environment for linear algebra, statistics, image processing and a wide range of other calculations.
- Mathematica - Commercial general-purpose high-level programming package for both symbolic and numerical calculations.