On-line resources for new Linux and ARC users

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General

ARC Manual for neuroimaging medical analysis at UofC (2019):

https://bookdown.org/u0243256/arc/

EBook, R Programming for Data Science:

https://bookdown.org/rdpeng/rprogdatascience/

Linux command line

If you are new to Linux, there is an easy to use reference for the Linux command line.

It is available for free download: http://linuxcommand.org/tlcl.php

SourceForge page for it: https://sourceforge.net/projects/linuxcommand/

Interactive tutorials: https://linuxsurvival.com/

Containers

Workshop "How to use Singularity!" -- a really good workshop. "Singularity" is now "Apptainer".

https://singularity-tutorial.github.io/

Interesting reading

The effect of switching to TCMalloc on RocksDB memory use.

https://blog.cloudflare.com/the-effect-of-switching-to-tcmalloc-on-rocksdb-memory-use/

The article discusses the differences between the standard glibc malloc and TCMalloc memory allocators.

v t e ARC

General ARC Pages	Altis Login Node Status ARC Cluster Status ARC Hardware ARC Software ARC Storage Terms of Use Open OnDemand Think Login Node Status

ARC Guides	ARC Cluster Guide How to find available partitions on ARC How to find current limits on ARC How to request an interactive GPU on ARC How to request GPUs for batch jobs on ARC How to run an interactive job on ARC How to use ARC scratch space Job Monitoring Managing software on ARC On-line resources for new Linux and ARC users

ARC Software	Abaqus ANSYS Apache Spark on ARC CESM Conda on ARC Fmriprep on ARC Freesurfer on ARC Gaussian on ARC GROMACS HDF5 Mathematica MATLAB Nektar++ OpenFOAM ORCA Perl Python PyTorch on ARC R on ARC Stan on ARC Tensorflow on ARC

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