User contributions for Tannistha.nandi
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8 June 2021
- 19:3919:39, 8 June 2021 diff hist −2 Bioinformatics applications →Performance evaluation
- 19:3419:34, 8 June 2021 diff hist +5 Bioinformatics applications →2. BWA (Burrows-Wheeler Aligner)
- 19:3419:34, 8 June 2021 diff hist +6 Bioinformatics applications →1. FastQC
- 19:3419:34, 8 June 2021 diff hist −2 Bioinformatics applications →2. BWA (Burrows-Wheeler Aligner)
- 19:3319:33, 8 June 2021 diff hist +328 Bioinformatics applications →2. BWA (Burrows-Wheeler Aligner)
- 19:3219:32, 8 June 2021 diff hist +34 Bioinformatics applications →Strategies to write efficient bioinformatics workflows for the ARC high performance computing (HPC) cluster
- 19:3119:31, 8 June 2021 diff hist +45 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 19:2519:25, 8 June 2021 diff hist +6 Bioinformatics applications →FastQC Tag: Visual edit
- 19:2519:25, 8 June 2021 diff hist +513 Bioinformatics applications →Performance evaluation
- 19:2419:24, 8 June 2021 diff hist +6 Bioinformatics applications →Performance evaluation
- 19:2219:22, 8 June 2021 diff hist +28 Bioinformatics applications →Performance evaluation
- 19:2219:22, 8 June 2021 diff hist +22 N File:Fastqc.png No edit summary current
- 19:0619:06, 8 June 2021 diff hist +17 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 19:0419:04, 8 June 2021 diff hist +10 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 19:0319:03, 8 June 2021 diff hist +10 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 19:0219:02, 8 June 2021 diff hist +730 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 18:5818:58, 8 June 2021 diff hist −1 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 18:5718:57, 8 June 2021 diff hist −5 Bioinformatics applications →Strategies to write efficient bioinformatics workflows for the ARC high performance computing (HPC) cluster
- 18:5718:57, 8 June 2021 diff hist +52 N File:ARC ClusterV3.png No edit summary current
- 18:5018:50, 8 June 2021 diff hist −3 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 06:0806:08, 8 June 2021 diff hist +13 Bioinformatics applications →Strategies to write efficient bioinformatics workflows for the ARC high performance computing (HPC) cluster
- 06:0706:07, 8 June 2021 diff hist +725 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 06:0506:05, 8 June 2021 diff hist +11 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 06:0406:04, 8 June 2021 diff hist +623 Bioinformatics applications →Strategy to speed up the fastqc runtime
- 06:0106:01, 8 June 2021 diff hist +1,804 Bioinformatics applications →FastQC
- 05:5905:59, 8 June 2021 diff hist +399 Bioinformatics applications →FastQC
- 05:5405:54, 8 June 2021 diff hist +1,532 Bioinformatics applications →FastQC
- 05:4205:42, 8 June 2021 diff hist −4 Bioinformatics applications →FastQC
- 05:4105:41, 8 June 2021 diff hist +544 Bioinformatics applications →FastQC
- 05:3905:39, 8 June 2021 diff hist −10 Bioinformatics applications /* The ARC cluster offers a variety of hardware gears to suit the requirements of any workflow. As a first step, review the compute resources on the ARC cluster (weblink). It will facilitate the process of choosing the appropriate partition depending on the nature of the workflow. For example, choose the gpu-v100 partition for GPU accelerators or the bigmem partition for a memory intensive workflow. Each partition has multiple compute nodes with similar hardware specifications. The illustrati...
- 05:3805:38, 8 June 2021 diff hist −11 Bioinformatics applications →One of the challenges to deal with big genomics data set is their long runtimes. The effective and efficient use of the computing resources on the Advanced Research Computing (ARC) cluster can speed up the runtimes.
- 05:3705:37, 8 June 2021 diff hist +466 Bioinformatics applications →Strategies to write efficient bioinformatics workflows for the ARC high performance computing (HPC) cluster
- 05:3405:34, 8 June 2021 diff hist −5 Bioinformatics applications →Strategies to write efficient bioinformatics workflows for the ARC high performance computing (HPC) cluster
- 05:3305:33, 8 June 2021 diff hist +57 Bioinformatics applications No edit summary
- 05:3105:31, 8 June 2021 diff hist +82 N File:ARC ClusterV2.png No edit summary current
- 05:2705:27, 8 June 2021 diff hist +1,233 N Bioinformatics applications Created page with "== Strategies to write efficient bioinformatics workflows for the ARC high performance computing (HPC) cluster == ===== One of the challenges to deal with big genomics data..."
- 05:2205:22, 8 June 2021 diff hist +35 RCS Home Page →Software pages
28 May 2021
- 03:0903:09, 28 May 2021 diff hist +6 RCS Software Management Group →Topics Discussed
- 03:0703:07, 28 May 2021 diff hist −19 RCS Software Management Group →Topics to discuss
- 03:0603:06, 28 May 2021 diff hist +17 RCS Software Management Group →Topics to discuss
- 03:0503:05, 28 May 2021 diff hist +23 RCS Software Management Group →Topics to discuss
- 03:0503:05, 28 May 2021 diff hist +477 RCS Software Management Group →Topics to discuss
21 May 2021
- 15:2315:23, 21 May 2021 diff hist −842 List of courses on TALC No edit summary
- 00:0000:00, 21 May 2021 diff hist +11 List of courses on TALC →Summer Trainees 2021
20 May 2021
- 23:5823:58, 20 May 2021 diff hist +832 List of courses on TALC →Current Courses
8 April 2021
- 15:4015:40, 8 April 2021 diff hist −9 m How to transfer data →How to get started
19 March 2021
- 06:1106:11, 19 March 2021 diff hist +26 RCSWiki talk:Tannistha.nandi →RCS Software Management Group current
18 March 2021
- 22:2222:22, 18 March 2021 diff hist −9 RCSWiki talk:Tannistha.nandi →RCS Software Management Group
- 22:2222:22, 18 March 2021 diff hist 0 RCSWiki talk:Tannistha.nandi →RCS Software Management Group
- 22:1722:17, 18 March 2021 diff hist +42 N User talk:Tannistha.nandi Tannistha.nandi moved page User talk:Tannistha.nandi to RCSWiki talk:Tannistha.nandi current Tag: New redirect
- 22:1722:17, 18 March 2021 diff hist 0 m RCSWiki talk:Tannistha.nandi Tannistha.nandi moved page User talk:Tannistha.nandi to RCSWiki talk:Tannistha.nandi
- 22:1722:17, 18 March 2021 diff hist −21 RCSWiki talk:Tannistha.nandi →RCS Software Management Group
- 22:1622:16, 18 March 2021 diff hist +18 RCSWiki talk:Tannistha.nandi →RCS Software Management Group
- 22:1522:15, 18 March 2021 diff hist +728 N RCSWiki talk:Tannistha.nandi →RCS Software Management Group: new section
20 January 2021
- 06:0706:07, 20 January 2021 diff hist −1 How to transfer data →Use Globus Web Application to transfer files
- 06:0606:06, 20 January 2021 diff hist +7 How to transfer data →Use Globus Web Application to transfer files
- 06:0406:04, 20 January 2021 diff hist +2 How to transfer data →Globus File Transfer
- 06:0206:02, 20 January 2021 diff hist −27 How to transfer data →Globus File Transfer
- 05:5705:57, 20 January 2021 diff hist +221 How to transfer data →Globus File Transfer
- 05:4305:43, 20 January 2021 diff hist +63 How to transfer data →Globus File Transfer
- 05:2405:24, 20 January 2021 diff hist +523 How to transfer data →Globus File Transfer
- 05:0405:04, 20 January 2021 diff hist +155 How to transfer data →Globus File Transfer
- 05:0305:03, 20 January 2021 diff hist −153 How to transfer data →Use Globus Web Application to transfer files
- 05:0305:03, 20 January 2021 diff hist −17 How to transfer data →Globus File Transfer
- 05:0205:02, 20 January 2021 diff hist +189 How to transfer data →Globus File Transfer
- 04:3404:34, 20 January 2021 diff hist +59 How to transfer data →Globus File Transfer
- 04:3104:31, 20 January 2021 diff hist +8 How to transfer data →Globus File Transfer
- 04:3004:30, 20 January 2021 diff hist +4 m How to transfer data →Globus File Transfer
- 04:2904:29, 20 January 2021 diff hist +57 How to transfer data →Globus File Transfer
- 04:2704:27, 20 January 2021 diff hist +74 How to transfer data →Globus File Transfer
- 04:0704:07, 20 January 2021 diff hist +13 How to transfer data →Globus File Transfer
- 04:0504:05, 20 January 2021 diff hist +124 m How to transfer data No edit summary
17 September 2020
- 08:2608:26, 17 September 2020 diff hist +1 ARC Cluster Guide →How to interact with ARC
- 08:2508:25, 17 September 2020 diff hist 0 N File:Cluster.png No edit summary current
- 08:2008:20, 17 September 2020 diff hist +4,509 ARC Cluster Guide No edit summary
- 07:5307:53, 17 September 2020 diff hist +47 User:Tannistha.nandi No edit summary current
14 September 2020
- 19:2719:27, 14 September 2020 diff hist 0 User:Tannistha.nandi →Prepare job scripts
- 19:2519:25, 14 September 2020 diff hist +25 User:Tannistha.nandi →‘salloc’ is to launch an interactive session, typically for tasks under 5 hours.
- 19:0619:06, 14 September 2020 diff hist +21 User:Tannistha.nandi →Prepare job scripts
- 18:5918:59, 14 September 2020 diff hist +30 User:Tannistha.nandi →Prepare job scripts
- 18:3118:31, 14 September 2020 diff hist +6 User:Tannistha.nandi →‘sbatch’ is to submit computations as jobs to run on the cluster. You can submit a job-script.sh via 'sbatch' for execution.
- 18:2118:21, 14 September 2020 diff hist +6 User:Tannistha.nandi →Prepare job scripts
- 18:1418:14, 14 September 2020 diff hist +9 User:Tannistha.nandi →Run jobs on ARC
8 September 2020
- 05:4705:47, 8 September 2020 diff hist −4 m User:Tannistha.nandi →Run jobs on ARC
- 05:4505:45, 8 September 2020 diff hist +2 User:Tannistha.nandi →Prepare job scripts
- 05:3705:37, 8 September 2020 diff hist 0 m MARC Cluster Guide →Home file system: /home
- 05:3405:34, 8 September 2020 diff hist +199 User:Tannistha.nandi →Prepare job scripts
- 05:3205:32, 8 September 2020 diff hist +12 User:Tannistha.nandi →Prepare job scripts
- 05:3005:30, 8 September 2020 diff hist +1,131 User:Tannistha.nandi →Prepare job scripts
7 September 2020
- 13:5113:51, 7 September 2020 diff hist −24 User:Tannistha.nandi →1.‘salloc’ is to launch an interactive session, typically for tasks under 5 hours.
6 September 2020
- 21:2621:26, 6 September 2020 diff hist +38 User:Tannistha.nandi No edit summary
- 06:1306:13, 6 September 2020 diff hist 0 User:Tannistha.nandi No edit summary
- 06:1206:12, 6 September 2020 diff hist −4 User:Tannistha.nandi No edit summary
5 September 2020
- 14:3414:34, 5 September 2020 diff hist +1 User:Tannistha.nandi →1.‘salloc’ is to launch an interactive session, typically for tasks under 5 hours.
- 14:3214:32, 5 September 2020 diff hist +31 User:Tannistha.nandi →1.‘salloc’ is to launch an interactive session, typically for tasks under 5 hours.
- 14:2614:26, 5 September 2020 diff hist +285 User:Tannistha.nandi →1.‘salloc’ is to launch an interactive session, typically for tasks under 5 hours.
- 14:1514:15, 5 September 2020 diff hist +18 User:Tannistha.nandi No edit summary
- 14:1214:12, 5 September 2020 diff hist +153 User:Tannistha.nandi No edit summary
- 04:5004:50, 5 September 2020 diff hist +1 User:Tannistha.nandi →Running Jobs on ARC
- 04:4304:43, 5 September 2020 diff hist 0 File:Cluter.png Tannistha.nandi uploaded a new version of File:Cluter.png current
- 04:4104:41, 5 September 2020 diff hist 0 N File:Cluter.png No edit summary
- 00:2800:28, 5 September 2020 diff hist +34 User:Tannistha.nandi No edit summary
4 September 2020
- 23:2323:23, 4 September 2020 diff hist −4 User:Tannistha.nandi →1.‘salloc’ is to launch an interactive session, typically for tasks under 5 hours.
- 23:2123:21, 4 September 2020 diff hist −5 User:Tannistha.nandi →2.‘sbatch’ is used to submit computations as jobs to run on the cluster. The user submits a job-script.sh via 'sbatch' for execution.
- 23:2023:20, 4 September 2020 diff hist −17 User:Tannistha.nandi →1.‘salloc’ is used to launch an interactive session, resources are requested with slurm directives.
- 22:5122:51, 4 September 2020 diff hist −19 User:Tannistha.nandi →Running Jobs on ARC
- 22:4822:48, 4 September 2020 diff hist −29 User:Tannistha.nandi →Running Jobs on ARC
- 22:4222:42, 4 September 2020 diff hist 0 User:Tannistha.nandi No edit summary
- 20:5520:55, 4 September 2020 diff hist +6 m User:Tannistha.nandi No edit summary
- 17:3517:35, 4 September 2020 diff hist −1 User:Tannistha.nandi →2.‘sbatch’ is used to submit computations as jobs to run on the cluster. The user submits a job-script.sh via 'sbatch' for execution.
- 17:3217:32, 4 September 2020 diff hist −5 User:Tannistha.nandi No edit summary
- 17:0117:01, 4 September 2020 diff hist +2,552 N User:Tannistha.nandi Created page with "'''Running Jobs on ARC''' ARC cluster is a collection of several compute nodes connected by high speed network. On ARC, computations have to be submitted as jobs. Once submit..."
- 16:1316:13, 4 September 2020 diff hist +20 N File:Run3.png No edit summary current