ARC Software: Difference between revisions
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= General = | |||
For some general consideration for setting up software in your home directory see | |||
[[Managing software on ARC]]. | |||
= Software Management = | |||
* [[Conda on ARC | Conda]] and Miniconda | |||
= General Tools = | |||
* [[Python]] | |||
* [[Perl]] | |||
= Libraries = | |||
== File Format Libraries == | |||
* [[HDF5]] | |||
= Atmospheric research = | |||
* [[CESM]] | |||
= Chemistry = | = Chemistry = | ||
* [[Gaussian on ARC | Gaussian 16]] | * [[Gaussian on ARC | Gaussian 16]] | ||
* [[GROMACS]] - Classical molecular dynamics simulator. | |||
= Computational Fluid Dynamics = | |||
* [[ANSYS]] - Fluent and CFX - commercial CFD software. | |||
* [[OpenFOAM]] - Open-source toolkit for creating CFD applications. | |||
= Finite Element Modelling = | |||
* [[ANSYS]] - ANSYS Fluent - commercial software for finite element-based structural analysis. | |||
* [[Abaqus]] - Commercial software for finite element-based analysis. | |||
= Geospatial Analysis = | = Geospatial Analysis = | ||
| Line 9: | Line 43: | ||
* [[Geopandas on ARC | Geopandas]] | * [[Geopandas on ARC | Geopandas]] | ||
= Machine Learning | = Machine Learning = | ||
* [[Tensorflow on ARC | Tensorflow]] | * [[Tensorflow on ARC | Tensorflow]] | ||
| Line 15: | Line 49: | ||
* [[Torch on ARC | PyTorch]] | * [[Torch on ARC | PyTorch]] | ||
* [[ | = Mathematical Libaries and Applications = | ||
* [[MATLAB]] - Commercial general-purpose high-level programming environment for linear algebra, statistics, image processing and a wide range of other calculations. | |||
* [[Mathematica]] - Commercial general-purpose high-level programming package for both symbolic and numerical calculations. | |||
= Microscopy = | |||
* [[Relion on ARC | Relion]] | |||
* [[Cellprofiler on ARC | Cellprofiler]] | |||
= Neuroimaging = | = Neuroimaging = | ||
* [[FSL on ARC | | * [[Freesurfer on ARC | Freesurfer]] | ||
* [[FSL on ARC | FSL]] | |||
* [[fmriprep on ARC | fmriprep]] | |||
* [[Statistical Parametric Mapping on ARC | SPM 12]] | * [[Statistical Parametric Mapping on ARC | SPM 12]] | ||
= | = Statistics = | ||
* [[R on ARC | R]] | |||
* [[ | * [[Stan on ARC | rstan]] | ||
= Reservoir Simulations = | = Reservoir Simulations = | ||
= Bioinformatics = | = Bioinformatics = | ||
[[Category:ARC]] | |||
[[Category:Software]] | |||
Revision as of 20:36, 25 October 2022
General
For some general consideration for setting up software in your home directory see Managing software on ARC.
Software Management
- Conda and Miniconda
General Tools
Libraries
File Format Libraries
Atmospheric research
Chemistry
- Gaussian 16
- GROMACS - Classical molecular dynamics simulator.
Computational Fluid Dynamics
- ANSYS - Fluent and CFX - commercial CFD software.
- OpenFOAM - Open-source toolkit for creating CFD applications.
Finite Element Modelling
- ANSYS - ANSYS Fluent - commercial software for finite element-based structural analysis.
- Abaqus - Commercial software for finite element-based analysis.
Geospatial Analysis
Machine Learning
Mathematical Libaries and Applications
- MATLAB - Commercial general-purpose high-level programming environment for linear algebra, statistics, image processing and a wide range of other calculations.
- Mathematica - Commercial general-purpose high-level programming package for both symbolic and numerical calculations.
Microscopy