Freesurfer on ARC

Freesurfer is a collection of neuroimaging software that can be used to process Magnetic Resonance Imaging files like DICOMs and NIFTIs. Detailed documentation can be found on the [[ https://surfer.nmr.mgh.harvard.edu/ | Freesurfer website]]

Most simple workflows that are scalable on ARC use recon-all to perform a reconstruction of the MRI image from the collection of slices. This is done by parallelizing over scans or subjects.