Fmriprep on ARC: Difference between revisions
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= Using on ARC = | = Using on ARC = | ||
== Version 22.0.1 === | |||
<pre> | |||
$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help | |||
usage: fmriprep [-h] [--version] [--skip_bids_validation] | |||
.... | |||
fMRIPrep: fMRI PREProcessing workflows v22.0.1 | |||
positional arguments: | |||
bids_dir the root folder of a BIDS valid dataset (sub-XXXXX | |||
.... | |||
</pre> | |||
== Version 20.2.3 === | |||
<pre> | <pre> | ||
$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help | $ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help | ||
Revision as of 15:08, 20 September 2022
General
fMRIPrep: fMRI PREProcessing workflows
Currently we have two singularity containers:
$ ls -l /global/software/fmriprep/containers/ -rwxr-xr-x 1 ian.percel ian.percel 4842659840 Jul 27 2021 fmriprep-20.2.3.simg -rwxr-xr-x 1 drozmano drozmano 3724558336 Sep 20 08:51 fmriprep-22.0.1.simg
Using on ARC
Version 22.0.1 =
$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help usage: fmriprep [-h] [--version] [--skip_bids_validation] .... fMRIPrep: fMRI PREProcessing workflows v22.0.1 positional arguments: bids_dir the root folder of a BIDS valid dataset (sub-XXXXX ....
Version 20.2.3 =
$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help You are using fMRIPrep-20.2.3, and a newer version of fMRIPrep is available: 21.0.2. Please check out our documentation about how and when to upgrade: https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading usage: fmriprep [-h] [--version] [--skip_bids_validation] ....