SignalP: Difference between revisions
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= Installation = | = Installation = | ||
First, you have to install your own conda, following this: | |||
Once you have it installed, activate your [Conda on ARC#Installing Conda | conda]: | |||
$ source ~/software/init-conda | |||
Then create a new environment and activate it too: | |||
<pre> | |||
(base) $ conda create -n signalp6 python=3.11 pip pillow numpy matplotlib tqdm pytorch=1.13 | |||
.... | |||
(base) $ conda activate signalp6 | |||
</pre> | |||
Download and unpack the installation archive. You have to use the link send to you by email: | |||
<pre> | |||
(signalp6) $ wget https://services.healthtech.dtu.dk/download/29d.............7e/signalp-6.0h.fast.tar.gz | |||
(signalp6) $ tar xfv signalp-6.0h.fast.tar.gz | |||
</pre> | |||
Change to the software directory and install it with <code>pip</code>: | |||
<pre> | |||
(signalp6) $ cd signalp6_fast/signalp-6-package | |||
(signalp6) $ pip install . | |||
.... | |||
</pre> | |||
Check if it works: | |||
<pre> | |||
(signalp6) $ $ signalp6 --version | |||
SignalP 6.0 Signal peptide prediction tool 6.0h | |||
</pre> | |||
Success. | |||
= Links = | = Links = | ||
[[ARC Software]] | [[ARC Software]] | ||
Revision as of 21:02, 1 October 2024
General
It is a licensed software. One has to agree to the academic license conditions before the download link will be provided.
Installation
First, you have to install your own conda, following this:
Once you have it installed, activate your [Conda on ARC#Installing Conda | conda]:
$ source ~/software/init-conda
Then create a new environment and activate it too:
(base) $ conda create -n signalp6 python=3.11 pip pillow numpy matplotlib tqdm pytorch=1.13 .... (base) $ conda activate signalp6
Download and unpack the installation archive. You have to use the link send to you by email:
(signalp6) $ wget https://services.healthtech.dtu.dk/download/29d.............7e/signalp-6.0h.fast.tar.gz (signalp6) $ tar xfv signalp-6.0h.fast.tar.gz
Change to the software directory and install it with pip:
(signalp6) $ cd signalp6_fast/signalp-6-package (signalp6) $ pip install . ....
Check if it works:
(signalp6) $ $ signalp6 --version SignalP 6.0 Signal peptide prediction tool 6.0h
Success.