Fmriprep on ARC

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Revision as of 15:06, 20 September 2022 by Dmitri (talk | contribs) (→‎General)
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fMRIPrep: fMRI PREProcessing workflows

Currently we have two singularity containers:

$ ls -l /global/software/fmriprep/containers/

-rwxr-xr-x 1 ian.percel ian.percel 4842659840 Jul 27  2021 fmriprep-20.2.3.simg
-rwxr-xr-x 1 drozmano   drozmano   3724558336 Sep 20 08:51 fmriprep-22.0.1.simg

Using on ARC

$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help

You are using fMRIPrep-20.2.3, and a newer version of fMRIPrep is available: 21.0.2.
Please check out our documentation about how and when to upgrade:
usage: fmriprep [-h] [--version] [--skip_bids_validation]