Difference between revisions of "Fmriprep on ARC"

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= Using on ARC =
 
= Using on ARC =
  
 +
== Version 22.0.1 ===
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<pre>
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$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help
 +
 +
usage: fmriprep [-h] [--version] [--skip_bids_validation]
 +
....
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fMRIPrep: fMRI PREProcessing workflows v22.0.1
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 +
positional arguments:
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  bids_dir              the root folder of a BIDS valid dataset (sub-XXXXX
 +
....
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</pre>
 +
 +
== Version 20.2.3 ===
 
<pre>
 
<pre>
 
$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help
 
$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help

Revision as of 15:08, 20 September 2022

General

fMRIPrep: fMRI PREProcessing workflows

Currently we have two singularity containers:

$ ls -l /global/software/fmriprep/containers/

-rwxr-xr-x 1 ian.percel ian.percel 4842659840 Jul 27  2021 fmriprep-20.2.3.simg
-rwxr-xr-x 1 drozmano   drozmano   3724558336 Sep 20 08:51 fmriprep-22.0.1.simg

Using on ARC

Version 22.0.1 =

$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help

usage: fmriprep [-h] [--version] [--skip_bids_validation]
....
fMRIPrep: fMRI PREProcessing workflows v22.0.1

positional arguments:
  bids_dir              the root folder of a BIDS valid dataset (sub-XXXXX
....

Version 20.2.3 =

$ singularity run /global/software/fmriprep/containers/fmriprep-20.2.3.simg --help

You are using fMRIPrep-20.2.3, and a newer version of fMRIPrep is available: 21.0.2.
Please check out our documentation about how and when to upgrade:
https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
usage: fmriprep [-h] [--version] [--skip_bids_validation]
....