ARC Software: Difference between revisions

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= General =
For some general consideration for setting up software in your home directory see
[[Managing software on ARC]].
= Software Management =
* [[Conda on ARC | Conda]] and Miniconda
= General Tools =
* [[Python]]
* [[Perl]]
= Libraries =
== File Format Libraries ==
* [[HDF5]]
= Atmospheric research =
* [[CESM]]
= Chemistry =
= Chemistry =


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= Finite Element Modelling =
= Finite Element Modelling =
* [[ANSYS]] - ANSYS Mechanical - commercial software for finite element-based structural analysis.
* [[ANSYS]] - ANSYS Fluent - commercial software for finite element-based structural analysis.
* [[Abaqus]] - Commercial software for finite element-based analysis.
* [[Abaqus]] - Commercial software for finite element-based analysis.


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= Mathematical Libaries and Applications =
= Mathematical Libaries and Applications =


* [[MATLAB]] - Commercial high-level programming environment for linear algebra, statistics, image processing and a wide range of other calculations
* [[MATLAB]] - Commercial general-purpose high-level programming environment for linear algebra, statistics, image processing and a wide range of other calculations.
* [[Mathematica]] - General-purpose high-level programming package for both symbolic and numerical calculations.
* [[Mathematica]] - Commercial general-purpose high-level programming package for both symbolic and numerical calculations.
 
= Microscopy =
 
* [[Relion on ARC | Relion]]
 
* [[Cellprofiler on ARC | Cellprofiler]]
 


= Neuroimaging =
= Neuroimaging =


* [[FSL on ARC | Freesurfer]]
* [[Freesurfer on ARC | Freesurfer]]


* [[Statistical Parametric Mapping on ARC | SPM 12]]
* [[FSL on ARC | FSL]]


= Package Management =
* [[fmriprep on ARC | fmriprep]]


* [[Conda on ARC | Conda]]
* [[Statistical Parametric Mapping on ARC | SPM 12]]


= Statistics =
= Statistics =
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= Bioinformatics =
= Bioinformatics =
[[Category:ARC]]
[[Category:Software]]

Revision as of 20:36, 25 October 2022

General

For some general consideration for setting up software in your home directory see Managing software on ARC.

Software Management

General Tools

Libraries

File Format Libraries

Atmospheric research

Chemistry

Computational Fluid Dynamics

  • ANSYS - Fluent and CFX - commercial CFD software.
  • OpenFOAM - Open-source toolkit for creating CFD applications.

Finite Element Modelling

  • ANSYS - ANSYS Fluent - commercial software for finite element-based structural analysis.
  • Abaqus - Commercial software for finite element-based analysis.

Geospatial Analysis

Machine Learning

Mathematical Libaries and Applications

  • MATLAB - Commercial general-purpose high-level programming environment for linear algebra, statistics, image processing and a wide range of other calculations.
  • Mathematica - Commercial general-purpose high-level programming package for both symbolic and numerical calculations.

Microscopy


Neuroimaging

Statistics

Reservoir Simulations

Bioinformatics